Data-driven adaptive threshold control for bike share systems. FJ Vázquez-Abad, S Bernabel, MC Fu. Simulation Conference (WSC), 2033-2044.

Data driven stochastic approximation for change detection. T Flynn, O Hadjiliadis, I Stamos, FJ Vázquez-Abad. Simulation Conference (WSC), 2279-2290.

A game-theoretic and stochastic survivability mechanism against induced attacks in Cognitive Radio Networks. S Mneimneh, S Bhunia, F Vázquez-Abad, S Sengupta. Pervasive and Mobile Computing 40, 577-592.

Special Issue on Large-Scale 3D Modeling of Urban Indoor or Outdoor Scenes from Images and Range Scans. I Stamos, M Pollefeys, L Quan, P Mordohai, Y Furukawa. Computer vision and image understanding 157, 1.

VariFunNet, an integrated multiscale modeling framework to study the effects of rare non-coding variants in genome-wide association studies: Applied to Alzheimer. Q. Liu, C. Chen, A. Gao, HH. Tong, L. Xie . IEEE International Conference on Bioinformatics and Biomedicine (BIBM). pp2177-2182.

Mining FDA resources to compute population-specific frequencies of adverse drug reactions. A. Poleksic, C. Turner, R. Dalal, P. Gray, L. Xie (2017) . IEEE International Conference on Bioinformatics and Biomedicine (BIBM). pp1809-1814.

Predicting serious rare adverse reactions of novel chemicals. A. Poleksic, L. Xie. BioRxiv doi: https://doi.org/10.1101/160473.

Confused or not Confused? Disentangling Brain Activity from EEG Data Using Bidirectional LSTM Recurrent Neural NetworksZ.H. Ni, A. C. Yuksel, X.Y. Ni, M. I. Mandel, L. Xie. Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics. pp241-246.

ANTENNA, a Multi-Rank, Multi-Layered Recommender System for Inferring Reliable Drug-Gene-Disease Associations: Repurposing Diazoxide as a Targeted Anti-Cancer Therapy. A. Wang, H. Lim, S.-Y. Cheng, L. Xie. BioKDD’17. Halifax, Canada.

JDINAC: joint density-based non-parametric differential interaction network analysis and classification using high-dimensional sparse omics data. J. Ji, D. He, Y. Feng, Y. He, F. Xue, L. Xie. Bioinformatics. 33(19):3080-3087.

Cross-Dependency Inference in Multi-layered Networks: A Collaborative Filtering Perspective. J. C. Chen, H.H. Tong, L. Xie, L, Ying, & Q. He. ACM TKDD. 11(4):article #42

Insights into the binding mode of MEK type-III inhibitors. A step towards discovering and designing allosteric kinase inhibitors across the human kinome. Z. Zhao, L. Xie, P.E. Bourne. PLoS One. 12(6):e0179936.

Determining cysteines available for covalent inhibition across the human kinome. Z. Zhao, Q. Liu, S. Bliven, L. Xie, P.E. Bourne. J. Med. Chem. 60(7):2879-2889.

Harnessing big data for systems pharmacology. L. Xie, E.J. Draizen, P.E. Bourne. Annu. Rev. Pharmacol. Toxicol. 57:245-262.

Detecting broken pointcuts using structural commonality and degree of interest. R Khatchadourian, A Rashid, H Masuhara, T Watanabe. Science of Computer Programming 150, 56-74.

Automated refactoring of legacy Java software to enumerated types. R Khatchadourian. Automated Software Engineering 24 (4), 757-787.

Defaultification refactoring: A tool for automatically converting Java methods to default. R Khatchadourian, H Masuhara. Automated Software Engineering (ASE), 2017 32nd IEEE/ACM International.

Automated refactoring of legacy Java software to default methods. R Khatchadourian, H Masuhara. Proceedings of the 39th International Conference on Software Engineering, 82-93.

Combinatorial and Probabilistic Aspects of the Multiple RNA Interaction ProblemSaad Mneimneh and Syed Ali Ahmed. Poster for RECOMB Hong Kong.

Counting with code. Saad Mneimneh and Alexey Nikolaev. ACM Journal of Computing Sciences in Colleges (also presented at CCSCNE).

Controlled Growth of Simplicial Complex NetworksAlexey Nikolaev, Saad Mneimneh, Amotz Bar-Noy, Ram Ramanathan. IEEE Conference on Computer Communications Workshops INFOCOM WKSHPS (also presented at NetSciX).

Social Plane for Recommenders in Network Performance ExpectationManagement. Yuanxun Zhang, Prasad Calyam, Saptarshi Debroy, and Sai Shreya Nuguri. Accepted for publication in IEEE Transactions on Network and Service Management.

Quantifying Trust for Robust Spectrum Fusion in Distributed Multi-channel Cognitive Radio Networks. Shameek Bhattacharjee, Saptarshi Debroy, and Mainak Chatterjee. IEEE Transactions on Cognitive Communications and Networking.