Mixed optimization for constrained resource allocation, an application to a local bus service. FJ Vázquez-Abad, L Fenn. Proceedings of the Winter Simulation Conference, 871-882.

Differentiation via Logarithmic Expansions. MC Fu, B Heidergott, H Leahu, F Vazquez-Abad. arXiv preprint arXiv:1608.07770.

Stochastic path optimization for robotic bees using cloud computing. F Vázquez-Abad, S Bernabel. Discrete Event Systems (WODES),13th International Workshop on, 135-140.

CNN-based object segmentation in urban lidar with missing points. A Zelener, I Stamos. 3D Vision (3DV), Fourth International Conference on, 417-425.

Trends and Trades. M Carlisle, O Hadjiliadis, I Stamos. Handbook of High-Frequency Trading and Modeling in Finance 9.

Improved genome-scale multi-target virtual screening via a novel collaborative filtering approach to cold-start problem. H.-S. Lim, P. Gary, L. Xie, A. Poleksic. Sci. Rep.. 6:38860.

Molecular Mechanisms Involved in the Side Effects of Fatty Acid Amide Hydrolase Inhibitors: A Structural Phenomics Approach to Proteome-wide Cellular Off-target Deconvolution and Disease AssociationS. Dider, J.D. Ji, Z. Zhao, L. Xie. npj Sys Biol Appl, 2:16023.

Large scale off-target prediction using an accurate and efficient one-class collaborative filtering algorithm and its application to drug repurposing. H.-S. Lim, A. Poleksic, Y. Yao, H. Tong, L. Zhuang, P. Meng, L. Xie. PLoS Comp Biol. 12(10):e1005135.

FASCINATE: Fast Cross-Layer Dependency Inference on Multi-layered Networks. C. Chen, H.H. Tong, L. Xie, L, Ying, & Q. He. In the Proceedings of 22th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, San Francisco, USA.

Toward high-throughput predictive modeling of protein binding/unbinding kinetics. S. H. Chiu, L. Xie. JCIM, 56(6):1164–1174.

Delineation of polypharmacology across the human structural kinome using a functional site interaction fingerprint approach. Z. Zhao, L. Xie, L. Xie, P. E. Bourne. J Med Chem. 59(9):4326-41.

Crowdsourced estimation of cognitive decline and resilience in Alzermer’s disease. G. I. Allen, Amoroso N. Amoroso, Anghel G. Anghel et al. Alzheimer’s & Dementia, 12(6):645-53.

Protein fold recognition using an improved single source k diverse shortest paths algorithm. J. Lhota, L. Xie. Proteins, 84(4):467-72.

Toward repurposing metformin as a precision anti-cancer therapy using structural systems pharmacology. T. Hart, S. Diber, W. Han, H. Xu, Z. Zhao, L Xie. Sci Rep. , 6:20441.

Providing data science support for systems pharmacology and its implications to drug discovery. T. Hart, L Xie. Expert Opin Drug Discov., 11(3):241-256.

Drug repurposing to target Ebola virus replication and virulence using structural systems pharmacology. Z. Zhao, C. Martin, R. Fan, P. E. Bourne, L Xie. BMC Bioinformatics, 17(1):90.

PDID: database of molecular-level putative protein-drug interactions in the structural human proteome. C. Wang, G. Hu, K. Wang, M. Brylinski, L. Xie, L. Kurgan. Bioinformatics, 32(4):579-86.

The Plasmodium falciparum Drugome and its Polypharmacological ImplicationsY. Zhang, L. Xie, L. Xie & P. E.Bourne. BioRxiv doi: http://biorxiv.org/content/early/2016/03/05/042481.

Testing Higher-Order Network Structures in an Online Experiment. Radford, Jason, Amotz Barnoy, Alexey Nikolaev, Saad Mneimneh, David Lazer, and Ram Ramanathan. In Proceedings of the 19th ACM Conference on Computer Supported Cooperative Work and Social Computing Companion, pp. 377-380. ACM.

Gibbs/MCMC Sampling for Multiple RNA Interaction with Sub-optimal Solutions. Mneimneh, Saad, and Syed Ali Ahmed. In International Conference on Algorithms for Computational Biology, pp. 78-90. Springer International Publishing.

A sampling approach for multiple RNA interaction: Finding sub-optimal solutions fast. Mneimneh, Saad, and Syed Ali Ahmed. In International Conference on Bioinformatics Models, Methods, and Algorithms.